Research Article |
Corresponding author: Tsveteslava V. Ignatova-Ivanova ( ts.ignatovaivanova@shu.bg ) Academic editor: Pavel Stoev
© 2023 Sevginar F. Ibryamova, Stephany Toschkova, Darina Ch. Bachvarova, Elitca Stanachkova, Radoslav I. Ivanov, Nikolay D. Natchev, Tsveteslava V. Ignatova-Ivanova.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Ibryamova SF, Toschkova S, Bachvarova DC, Stanachkova E, Ivanov RI, Natchev ND, Ignatova-Ivanova TV (2023) Study of the dynamics of the microbial communities in the wedge clam Donax trunculus (Linnaeus, 1758) from the Bulgarian aquatory of the Black Sea. BioRisk 21: 29-40. https://doi.org/10.3897/biorisk.21.111253
|
In the present work, we investigated the dynamics of the microbial communities in the wedge clam Donax trunculus (Linnaeus, 1758) from the Bulgarian coastal waters of the Black Sea. The samples were collected in the period of January 2020 until December 2022 from Arkutino, Ahtopol, Obzor and Tsarevo. The BIOLOG system was used for microbiological determination. In our investigation were isolated the following microorganisms: Enterococcus cancerogenus, Enterococcus hirae, Escherichia vulneris, Citrobacter farmeri, Acinetobacter gyllenbergii, Enterococcus hirae, Escherichia vulneris, Enterobacter cloacae, Escherichia hermannii, Pseudomonas mendocina, Pseudomonas fulva, Pseudomonas alcaligenes, Pseudomonas putida, Acinetobacter johnsonii, Acinetobacter gyllenbergii, Enterococcus hirae, Escherichia vulneris, Enterococcus gallinarum, Citrobacter sedakii, Pseudomonas putida, Streptococcus lugdunensis, Enterococcus casseliflavus, Vibrio cincinnatiensis, Vibrio alginolyticus, Vibrio parahaemolyticus, Enterococcus hirae, Streptococcus aureus, Staphylococcus lugdunensis and Enterococcus casseliflavus. During the winter period, we detected the presence of Pseudomonas sp. – P. alcaligenes, P. putida, and A. gyllenbergii. In the autumn months we isolated C. sedakii, C. farmeri, A. gyllenbergii, A. johnsonii, P. fulva and E. casseliflavus. In the spring, E. cancerogenus, E. hirae and Pseudomonas mendocina were found. During the summer, the highest biodiversity of microorganisms - E. hirae, E. vulneris, E. cloacae, E. gallinarum, P. putida, V. cincinnatiensis, V. alginolyticus, V. parahaemolyticus, S. aureus, E. hermannii and S. lugdunensis were registered. Although our three-year research showed that some species are permanent and others are transient, we tend to accept the conclusion that there is only a transient microbiota in mussels and it changes depending on environmental conditions or is a result of pollution of the Black Sea.
Bivalves, hydrobiology, microbial identification, molluscs, pathogens, pollutions
The wedge clam Donax trunculus (Linnaeus, 1758) is found in the entire region of the Black Sea coast, but according to
The shellfish are exposed to diseases caused by various bacteria, which can cause a mass extinction of the species. It was detected that the cause of outbreaks of diseases in bivalves is related to conditional pathogens, i.e. free-living pathogenic bacteria which, under favourable conditions, can cause diseases. This poses a serious risk to humans as consumers of bivalve species. Pathogenic bacteria can enter into the clams directly from seawater, from the microalgae they feed on, but also as a result of anthropogenic pollution of the environment. For D. trunculus, various studies indicate it importance for the assessment and monitoring of the ecological conditions of the sandy beaches (
After collection of three subsamples (each of about 1 kg), the mussels were refrigerated (4 °C) and transported to the laboratory for further immediate analysis, without freezing the specimens. In this study, we examined wedge clams of similar size, weight and shape to ensure maximal uniformity in the applied methods (
The mussels were scrubbed free of dirt, washed in hypochlorite solution (20 mg l-1), rinsed with sterile distilled water and shucked with a sterile knife. The whole soft tissues of the mussel’s liquor samples (about 100 g) were homogenised.
Faecal coliforms (FC) were enumerated through five tubes per dilution most probable number (MPN) series (
The microbial identification was performed by the BIOLOG Microbial Identification System VIO45101AM. The isolated strains were screened on BL4021502 Tryptic Soy Agar (TCA), cultured for 24 hours at 37 °C and then subjected to Gen III plaque identification to identify Gram positive and Gram negative aerobic bacteria. The microscopic pictures were performed using stereomicroscope OPTIKA (Italy) with a DinoEye, Eyepiece camera with 5 megapixels. The photographs were performed by using a Canon EOS 60D camera. The GEN III MicroPlate test panel provides a standardised micromethod using 94 biochemical tests to profile and identify a broad range of Gram-negative and Gram-positive bacteria. BIOLOG’s Microbial Identification Systems software (e.g. OmniLog Data Collection) was used to identify the bacterium from its phenotypic pattern in the GEN III MicroPlate. The BIOLOG system allows to quickly and accurately identify more than 2900 species of aerobic and anaerobic bacteria, yeasts and fungi. BIOLOG’s advanced phenotypic technology provides valuable information for the properties of the strains, in addition to species-level identification. BIOLOG’s carbon technology identifies the environment and pathogenic microorganisms by producing a characteristic pattern or “metabolic fingerprint” of discrete test reactions performed in a 96-well microplate. The culture suspensions are tested with a panel of pre-selected assays, then incubated, read and compared with extensive data-bases (https://www.biolog.com/products-portfolio-overview/microbial-identification).
The isolated species of microorganisms by year and percentage are presented in Figs
The species E. hirae, E. vulneris, E. cloacae, E. hermannii, P. mendocina, P. fulva, P. alcaligenes, P. putida, A. johnsonii and A. gyllenbergii were isolated from the Ahtopol Region (Fig.
The species E. hirae, E. vulneris, E. gallinarum, C. sedakii, P. putida and S. lugdunensis were isolated from the Obzor Region (Fig.
The species E. casseliflavus, Vibrio cincinnatiensis, V. alginolyticus, V. parahaemolyticus, E. hirae, S. aureus, S. lugdunensis and E. casseliflavus were isolated from the Tsarevo Region (Fig.
According to our results, the microbiota found in mussels can be considered in two types. The so-called autochthonous microbiota, which was stable and permanently present, independent of changes in environmental conditions. The allochthonous (transient) microbiota, was entirely dependent on environmental conditions and was related to the change in these conditions. On the basis of our investigation, we can state that the species E. hirae (from the end of the spring and during the summer), E. vulneris (during the summer) and A. gyllenbergii (in the autumn), which were isolated in all three years, represented autochthonous microflora for the Arkutino area. In contrast, the species E. сancerogenus (isolated only in May) and C. farmeri – detected in September, were considered transitional species. In our previous research (
E. vulneris is an opportunistic human pathogen. It was reported primarily in elderly patients and invasive infections have been observed in immunocompromised persons. E. vulneris can cause severe diarrhoea and sepsis in infants (
The presence of E. vulneris was permanent and that species may have become part of the autochthonous microflora as a result of anthropogenic activity and environmental pollution from the hotels and resorts in the area - the species was mainly isolated during the active summer season - from June to August.
The most diverse microorganisms were isolated from the Ahtopol Region. Of these, autochthonous species, detected in all three years were: E. hirae, E. vulneris, E. cloacae and A. gyllenbergii. The species E. hermannii, P. mendocina, P. fulva, P. alcaligenes, P. putida and A. johnsonii were considered allochthonous. As in the Arkutino Region, we registered an increase over the allowed amounts of faecal coliforms (under Ordinance No. 4/20.10.2000) during the summer season until the end of September. In the region of Ahtopol, two species of the genus Escherichia sp. were detected – E. hermannii and E. vulneris. The species of Pseudomonas sp. were isolated during the cold months. Presumably, the different species of the genus Pseudomonas sp. appeared because of accidents related to changes in the direction of sea currents and variations in the water temperature or pH. However, it can also be speculated that the genus Pseudomonas sp. is autochthonous to the mussels D. trunculus, as some species may be allochthonous.
In the region of Obzor, where there was no active summer touristic season, only a few species of the microorganisms were isolated. All microorganism species were transient, as there was not a single species that was isolated regularly in all of the three years. Only three species of Vibrio sp. were isolated from the region of Tsarevo. We can attribute all three species to the transitional microbiota and connect them to the anthropogenic factors, since they were isolated only in the month of August. All other species were isolated sporadically in all of the three years of our investigation and no time pattern was detected.
In our opinion, allochthonous microbiota can enter mussels as a result of environmental pollution of different origins - natural, due to changes in climate, temperature, salinity, currents or as a result of human activity. Considering that the mussels are the filter of the sea, many microorganisms enter them during feeding. In 1960, Colwell and Liston showed a high percentage of the presence of the species Pseudomonas sp., Vibrio sp., Flavobacterium sp. and Achromobacter sp. in the Pacific oyster (Crassostrea gigas). Most of the studies since then were concentrated on the pathogens that cause shellfish diseases. The best studied pathogenic species belonged to Vibrio sp. For example, V. tapetis received special attention since it caused Brown Ring Disease (BRD), the bacterial etiology which is described in adult clams. In addition, the disease caused by it is considered one of the main limiting factors for the colonies of the Manila clams (Venerupis philippinarum) and was also detected in cultured clams in Korea (Europe-
A study by
Previous research on different fish species from the Bulgarian Black Sea aquatory showed that the Pseudomonas species are of key importance for the ichthyofauna and are a permanent part of the composition of the fish microbiota (
When studying bivalves, it is very important to know their microbiological composition, in order to be able to evaluate the various diseases related to consumption of these organisms by humans. Many species inhabiting the Black Sea feed on wedge clams, which, if infected by a certain type of microorganism, can cause imbalances in the populations. This could prove potentially fatal for the fragile ecology of the Black Sea. Our results regarding the dynamics of the microbial population in D. trunculus showed that some species of microbial pathogens were permanent and others were transient. Despite the fact that we detected rather regularly some species of microorganisms, we tend to accept the idea that there is only a transient microbiota in mussels and it changes depending on environmental conditions or may be a result of pollution of the Black Sea. We cannot exclude, however, that D. trunculus developed symbiosis with some species of bacteria and use them as a source of vitamins and minerals. Further investigations will verify or disprove this hypothesis.
The authors have declared that no competing interests exist.
No ethical statement was reported.
This study was financially supported by the National Research Fund of the Bulgarian Ministry of Education and Science (Grant- H31/6 KP-06-H31/6/10.12.19) and by Shumen University, Department of Biology (Grant 08-113/20.02.2023).
Sevginar F. Ibryamova, Stephany Toschkova, Darina Ch. Bachvarova, Elitca Stanachkova - microbiological analysis, Radoslav I. Ivanov and Nikolay D. Natchev - delivery of mussels by trawling, Tsveteslava V. Ignatova-Ivanova - writing the article and its concept.
All of the data that support the findings of this study are available in the main text. The data underpinning the analysis reported in this paper are deposited at “Data repository” at https://doi.org/10.3897/biorisk.21.111253.