Research Article |
Corresponding author: Silvena Boteva ( sbboteva@biofac.uni-sofia.bg ) Academic editor: Michaela Beltcheva
© 2022 Michaella Petkova, Anelia Kenarova, Silvena Boteva, Stela Georgieva, Christo Chanev, Galina Radeva.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Petkova M, Kenarova A, Boteva S, Georgieva S, Chanev C, Radeva G (2022) Differences in bacterial functional profiles from loamy sand and clay loam textured soils under fungicide QuadrisR impact. In: Chankova S, Peneva V, Metcheva R, Beltcheva M, Vassilev K, Radeva G, Danova K (Eds) Current trends of ecology. BioRisk 17: 31-43. https://doi.org/10.3897/biorisk.17.76939
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The non-target effect of the fungicide QuadrisR on the bacterial community from grassland loamy sand (LS) and cropland clay loam (CL) soils with unknown history of fungicide usage was investigated. QuadrisR was applied to soil mesocosms at 0.0 mg kg-1 (Az0), 2.90 mg kg-1 (Az1), 14.65 mg kg-1 (Az2) and 35.0 mg kg-1 (Az3) calculated towards the active ingredient azoxystrobin (Az). Response of bacterial communities to QuadrisR was investigated during a 120-day incubation experiment, evaluating the shifts in bacterial catabolic profiles by the community-level physiological profiling (CLPP) technique and Biolog EcoPlatesTM method. QuadrisR decreased the overall catabolic activity (AWCD) of soil bacterial communities and the rate of decrease was independent of soil type and fungicide concentration. Fungicide affected negatively the utilisation of amines and positively that of amino acids in both soil types, whereas the effects on other carbon guilds (carbohydrates, carboxylic acids and polymers) corresponded closely to the respective soil type and fungicide concentration. Results indicated the presence of non-target effects of QuadrisR on bacterial functioning; hence, it is important to address the fungicide side-effects on soil health.
Average well colour development, community-level physiological profiling, fungicide azoxystrobin, QuadrisR, soil bacterial communities
Plant diseases are a common occurrence, often having a significant economic impact on yield and quality; thus, managing diseases is an essential component of production for most crops. For this reason, fungicides are used to kill fungi by damaging their cell membranes, inactivating critical enzymes or proteins or by interfering with key processes, such as energy production or respiration (
These pesticides are designed to manage fungal pathogens, although their broad-spectrum mode of action also produces non-target impacts. Due to the unique mechanism of action, strobilurins may directly affect soil fungi by inhibiting mitochondrial respiration, inducing a shift from fungal to bacterial dominance in soil activities (
The aim of this study was to elucidate the effects of QuadrisR, Az containing fungicide, on soil bacterial metabolism. The study suggested that QuadrisR can potentially cause long-term adverse effects on soil nutrient turnover, affecting bacterial metabolism, although bacteria are considered as fungicide non-target organisms.
In this study, two soils with different histories of management practice were used. Five subsamples were pooled randomly from the surface layers (0–20 cm) of grassland and cropland located near Gabra Village (Sofia Region, Bulgaria): 42°31'48.36"N, 23°37'28.20"E (Fig.
Four sets of three replicated mesocosms (2 kg) were prepared for each soil type. The following treatments were studied: control (Az0) and QuadrisR amendments of 2.90 mg kg-1 (Az1), 14.65 mg kg-1 (Az2) and 35.00 mg kg-1 (Az3), calculated towards the active ingredient – Az. Soil water content was adjusted to 60% of the maximum water holding capacity and it was maintained with sterile distilled water during the experiment. The mesocosms were incubated at 22 ± 1 °C in dark to prevent physical degradation of Az by light. Soil samples were collected randomly in triplicates from each mesocosm on the 1st (D1), 30th (D30), 60th (D60), 90th (D90) and 120th (D120) day after fungicide application.
Soil texture was defined and classified according to
The method of Az soil residues extraction and determination was explained in detail in
EcoPlates (Biolog Inc., Hayward, CA, USA) were used to establish the changes in CLPPs over time. The procedure of plates’ inoculation, cultivation and monitoring (every 12 hr for 5 days) was described in detail in
Each data point in the paper represented the mean value of the respective Az soil amendment ± standard deviation. One-way ANOVA, followed by Tukey’s test, was performed to examine the differences in the means of soil (pH, NO3-N, NH4-N, P2O5, Az) and bacterial (AWCD and CLPP) parameters. Principal component analysis (PCA) was performed with soil abiotic data to assess the differences in soil physical environments after QuadrisR application. The differences in CLPPs between soil types and amongst fungicide concentrations were assessed with the graph ‘one-to-one’ technique. The above statistics were performed with the package PAST (
The soil textures of grassland and cropland were classified as loamy sand (LS; 2% clay, 15% silt and 83% sand) and clay loam (CL; 27% clay, 37% silt and 36% sand), respectively. Soils were well abundant in organic carbon (LS: 21.92 ± 1.41 g kg-1 and CL: 23.4 ± 3.11 g kg-1) and Kjeldahl nitrogen (LS: 2.20 ± 0.21 g kg-1 and CL: 2.64 ± 0.34 g kg-1), both of them fluctuating insignificantly during the incubation time. Soil pH was moderately acidic (5.63) at LS and neutral (6.99) at CL and, during the incubation, it decreased significantly (LS: by Az1 – 8%, Az2 – 12% and Az3 – 14%) and insignificantly (CL: by Az1 – 0.8%, Az2 – 1.1% and Az3 – 1.3%) in fungicide amended soil mesocosms. QuadrisR application increased the overall soil NO3-N – in LS by 10% (Az1), 13% (Az2) and 20% (Az3) and, in CL, by 70% (Az1), 34% (Az2) and 19% (Az3). On the other hand, the overall soil NH4-N concentrations decreased by 15% (LS) and 39% (CL). Soil concentrations of P2O5 were much more stable than those of the inorganic nitrogen, decreasing during the incubation by 8.6% (LS) and 14.3% (CL).
Az soil residues decreased over time and the rate of decrease was higher for LS than those for CL – DT50 ranged for LS from 36.5 ± 7.1 (Az1) to 86.6 ± 4.1 (Az3) days, whereas those for CL ranged from 130.8 ± 7.8 (Az1) to 212.1 ± 3.2 (Az3) days.
PCA, based on soil physico-chemical properties and Az soil residues, was conducted in order to elucidate the similarity amongst soil physical environments (Fig.
The AWCD of Az0 (CL) -1.69 OD was calculated to be around 35% higher than that of Az0 (LS) -1.25 OD. QuadrisR application decreased the overall mean value of AWCD (except Az1 at LS and Az2 at CL) and the changes were significant (Az3 at LS and Az1 and Az3 at CL) and insignificant (Az2 at LS). A stimulation effect was recorded for Az1 (LS) and Az2 (CL), being significant only for the second one. Temporal QuadrisR effects on bacterial metabolism were very similar, independent both on fungicide concentration and soil type – AWCD profiles manifested a decrease in bacterial metabolism for at least two months (D1 – D60), followed by recovery (D60 – D90) and stimulation (D120). Different metabolic profiles over time were formed for Az2 and Az3 at CL – permanent stimulation (Az2, except on D1) and dramatic decrease (Az3 after D60) after fungicide application. The values of QuadrisR that influenced AWCDs were much higher than that of Az0 on D120 (except Az3 at CL) and the rates of stimulation were in reverse- (LS) and non- (CL) relationships with the applied fungicide concentrations.
One-way ANOVA showed that the respective AWCD means of Az1 and Az3 did not differ significantly between LS and CL (F < 2.05, p > 0.16), opposite to that of Az2 (F = 18.5, p = 0.000).
It was obvious that bacterial metabolism was changed under QuadrisR impact, but AWCD was not sufficiently powerful to demonstrate the differences of these changes as a dependence of the applied fungicide concentration and soil properties. Therefore, after grouping the EcoPlate carbon sources into carbon guilds (CG), the CLPP approach and ‘one-to-one’ analysis were used to elucidate the intrinsic nature of AWCD changes (Fig.
‘One-to-one’ comparison of CLPPs between loamy sand and clay loam (LS – CL) soil mesocosms and between QuadrisR un-amended (Az0) and fungicide-amended soil mesocosms (Az1 – Az3) per soil type. Diamond symbols illustrate the mean (n = 3) utilisation rate of the respective carbon guild, bars illustrate the standard deviations and colour denotes the fungicide concentration - Az1: green, Az2: blue and Az3: red.
In order to understand the insights of changes in CG utilisation rates under QuadrisR, the overall number of utilisable CSs were counted – metabolic richness, as well as the index of carbon sources’ utilisation evenness per CG.
Most of the changes occurred in CGs related to shifts into the “evenness” rather than the “richness” of utilisable CSs. For example, the richness changes under QuadrisR were detected only for the utilisation of CHs and CAs at CL - utilisation of carbohydrate D-Xylose (Az1 – Az3) was inhibited, whereas that of carboxylic acids, γ-Hydroxybutyric acid (Az1) and 2-Hydroxy benzoic acid and α-Ketobutyric acid (Az2 and Az3), was stimulated. Much more changeable amongst soil mesocosms was the index of metabolic evenness. The greatest between-soil type differences were detected at: 1) Az1, where QuadrisR increased the metabolic evenness of Polym, CA and Amin at LS and decreased that at CL and 2) Az3, where QuadrisR increased the metabolic evenness of CH, Polym and CA at CL and decreased that at LS. The between-soil type similarity was found at Az2, where QuadrisR increased the metabolic evenness of CA, AA and Amin.
Soil amendments with QuadrisR, even by the lowest fungicide concentration, created new physical environments referring mainly to changes in soil pH, nitrogen pool and presence of allochthones substrates (Az and QuadrisR’s adjuvants). Similar soil acidification after Az application was also reported by earlier studies (
Soil amendments with QuadrisR influenced the soil nitrogen pool, changing bioavailable concentrations and forms of inorganic nitrogen which could be related to the adjuvants presented in fungicide commercial formulations (
The ordination of soil physical environments demonstrated that QuadrisR application in increasing concentrations influenced soil properties, creating new physical environments. We supposed that newly-created environments might influence soil bacteria to adapt their metabolism.
In this study, we evaluated the QuadrisR effects on soil heterotrophic bacteria, which display a substantial role in plant growth rates, mineralising dead organic matter and detoxifying a range of exogenous substances. Bacteria are considered as Az non-target organisms, due to the fungicide mode of action on mitochondrial respiration (
QuadrisR application influenced bacterial metabolism for at least four months, decreasing it in most of the soil mesocosms, except at Az1 (LS) and Az2 (CL). The most serious negative effects were detected during the first two months after fungicide application, followed by recovery and stimulation of bacterial metabolic activity (except Az3 at CL). Some researchers reported inhibitory effects of fungicides on bacterial metabolic activity (
Earlier studies (
Higher fungicide concentrations (Az2 and Az3) widened the spectrum of impacted CGs, but these effects could be related to soil chemical pollution, rather than to the controlled use of QuadrisR for plant protection.
In both soil types, QuadrisR application influenced metabolic evenness rather than on metabolic richness, which might be explained by the intrinsic bacterial community capacity to be metabolic resistant, resilient and redundant (
We assumed that QuadrisR significantly changed soil nutrient pools and the changes might occur due to soil accumulation of dead fungal biomass, induction of detoxification agents (mainly proteins) - molecules that can later be metabolised by the same microbiota (
The study showed that soil properties (soil texture, pH and organic and inorganic substances) were of significant importance for the fate of applied fungicide QuadrisR, as well as its effects on bacterial metabolism. The fungicide decreased for at least four months the overall bacterial activity (AWCD), shifted the metabolite profiles (CLPPs) of bacterial communities and changed the preferred carbon sources and metabolic diversity. Fungicide also affected the mode of environmental control on bacteria, in accordance with soil peculiarities.
This study was financially supported by the National Research Fund of the Bulgarian Ministry of Education and Science (grant DN 11/6 - Dec, 2017).