Data Paper |
Corresponding author: Tsveteslava Ignatova-Ivanova ( tsignatovaivanova@shu.bg ) Academic editor: Galina Radeva
© 2022 Sevginar Ibryamova, Borislava Pavlova, Elitca Stanachkova, Seniha Salim, Aysel Lyatif, Dimitar Dimitrov, Darina Bachvarova, Nesho Chipev, Nikolay Natchev, Tsveteslava Ignatova-Ivanova.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Ibryamova S, Pavlova B, Stanachkova E, Salim S, Lyatif A, Dimitrov D, Bachvarova D, Chipev N, Natchev N, Ignatova-Ivanova T (2022) Seasonal variations of the microflora of wedge clam Donax trunculus (Linnaeus, 1758) from the region of Arkutino (Bulgarian Black Sea aquatory). In: Chankova S, Peneva V, Metcheva R, Beltcheva M, Vassilev K, Radeva G, Danova K (Eds) Current trends of ecology. BioRisk 17: 253-262. https://doi.org/10.3897/biorisk.17.77097
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The main goal of the present study was to investigate the impact of the state of the environment on the microbiota of the wedge clam Donax trunculus (Linnaeus, 1758) from the region of Arkutino (Bulgarian Black Sea aquatory). The species Enterococcus hirae was isolated during the summer (from May to August). The species P. mendocina prefers the warmer months and the species P. alcaligenes the colder ones. The temperature followed a course of decrease during the period September 2020 to January 2021, followed by a slow increase from February 2021. Comparing May 2020 with May 2021, it became evident that in 2021 the temperature was 1.5 °C lower. We can say that the number of the species P. alcaligenes was twice as high in May 2021. It is likely that this species preferred lower optimum temperatures and constant other parameters. For the species Enterococcus hirae such dependence was not observed - the number remained constant in May, but with increasing temperature the number of microorganisms decreased during the summer months. The species seemed to preferably develop at pH 7.78. The species A. gyllenbergii preferably grows at temperatures between 20.3–25.7 °C and the optimal temperature was 25.7 °C. For C. farmeri the optimum conditions were temperature 26.2 °C and pH 7.3. The species E. vulneris was probably related not only to the increase in water temperature, but also to the anthropogenic factor, as it was found only in July.
Black sea, Donax trunculus, microbial identification, pathogens
Among marine bivalve species, the wedge clam Donax trunculus (Linnaeus, 1758) has one of the highest yields in the world. The habitat of this species is close to open sandy beaches, where it forms thick beds. It is found along the Atlantic-Mediterranean coast with the highest density at a depth from 0 to 3 m (
The main goal of the present study was to investigate the impact of the state of the marine environment on the microbiota of the wedge clams D. trunculus from the region of Arkutino (Bulgarian Black Sea aquatory).
The samples were collected from the region of Arkutino (exact field coordinates 42.3341 N, 27.7317 E: Datum WGS 84) from May 2019 until May 2021. The laboratory studies were conducted at the Department of Biology, University of Shumen, Bulgaria.
The wedge clams were harvested from the Bulgarian Black Sea aquatory. After collection of the three subsamples (each of about 1 kg), they were refrigerated (4 °C) and transported to the laboratory for further immediate analysis, without freezing the specimens.
In this study, we examined wedge clams of similar size, weight, and shape to ensure maximal uniformity in the applied methods (
During the mussel sampling, we measured in situ the temperature, total salinity (by using YSI Model 33 salinity meter), and pH (by using ATC Piccolo HI1280 pH-meter).
Three subsamples (each of about 1 kg of wedge clams) were used for the microbiological analyses. The clams were scrubbed free of dirt, washed in hypochlorite solution (20 mg l-1), rinsed with sterile distilled water, and shucked with a sterile knife. Tissue liquor samples (about 100 g) were homogenized (
Fecal coliforms (FC) were enumerated through five tubes per dilution most probable number (MPN) series (
The microbial identification was performed by the Biolog Microbial Identification System (VIO45101AM). The isolated strains were screened on BL4021502 Tryptic Soy Agar (TCA), cultured for 24 hours at 37 °C, and then subjected to Gen III plaque identification to identify Gram-positive and Gram-negative aerobic bacteria. The microscopic pictures were made using stereomicroscope OPTIKA (Italy) with a DinoEye, Eyepiece camera with 5 megapixels. The photographs were performed by using a Canon EOS 60D camera. The GEN III MicroPlate test panel provides a standardized micromethod using 94 biochemical tests to profile and identify a broad range of Gram-negative and Gram-positive bacteria. Biolog’s Microbial Identification Systems software (e.g. OmniLog Data Collection) is used to identify the bacterium from its phenotypic pattern in the GEN III MicroPlate. The BIOLOGIST system allows to quickly and accurately identify more than 2900 species of aerobic and anaerobic bacteria, yeasts, and fungi. Biolog’s advanced phenotypic technology provides valuable information on the properties of the strains, in addition to species-level identification. Biolog’s carbon technology identifies the environment and pathogenic microorganisms by producing a characteristic pattern or “metabolic fingerprint” of discrete test reactions performed in a 96-well microplate. The culture suspensions are tested with a panel of pre-selected assays, then incubated, read and compared with extensive databases. https://www.biolog.com/products-portfolio-overview/microbial-identification/
We conducted a physicochemical analysis of the sea waters. The results are summarized in Table
Region | Date | Depth | Temperature | pH | Salinity | Dissolvedo2 |
M | [° C] | [pH] | [ppt] | [mg/l] | ||
Arkutino | 05.2020 | 2 to 4 | 24.4 | 7.78 | 12.2 | 7.9 |
Arkutino | 06.2020 | 2 to 4 | 25.5 | 7.32 | 13.5 | 7.7 |
Arkutino | 07.2020 | 2 to 4 | 27.2 | 8.26 | 13.5 | 7.8 |
Arkutino | 08.2020 | 2 to 4 | 27.7 | 8.36 | 11.2 | 8.07 |
Arkutino | 09.2020 | 2 to 4 | 26.2 | 8.20 | 11.2 | 8.1 |
Arkutino | 10.2020 | 2 to 4 | 25.7 | 8.13 | 11.2 | 8.1 |
Arkutino | 11.2020 | 2 to 4 | 22.5 | 7.2 | 12.78 | 6.9 |
Arkutino | 12.2020 | 2 to 4 | 19.9 | 6.5 | 12.69 | 6.8 |
Arkutino | 01.2021 | 2 to 4 | 19.8 | 6.5 | 12.71 | 6.9 |
Arkutino | 02.2021 | 2 to 4 | 20.3 | 6.9 | 12.78 | 7.5 |
Arkutino | 03.2021 | 2 to 4 | 22.5 | 7.3 | 12.99 | 7.7 |
Arkutino | 04.2021 | 2 to 4 | 23.1 | 7.4 | 13.1 | 7.7 |
Arkutino | 05.2021 | 2 to 4 | 22.9 | 7.70 | 13.3 | 7.6 |
The dynamics of changes in the physicochemical parameter values are shown in Fig.
From the data presented in Fig.
The microorganisms isolated from D. trunculus were determined by the Biolog Microbial Identification System (Biologist VIO45101AM) to species level. After 24 h of cultivation on different media, the number of cells in 1 ml were obtained - data represented in Table
Region/clam species | Pseudomonas agar | Cetrimid agar | Chromokult agar | MacConkey agar | Strain BIOLOG |
---|---|---|---|---|---|
Arkutino 17.05.2020/ D. trunculus | 3.8×104 | 8.4×104 | Enterococcus hirae Pseudomonas mendocina | ||
Arkutino 20.06.2020/ D. trunculus | 5.3×104 | 1.7×104 | Enterococcus hirae | ||
Arkutino 25.07.2020/ D. trunculus | 1.6×107 | Escherichia vulneris | |||
Arkutino/ 25.08.20 D. trunculus | 5.8×104 | Enterococcus hirae | |||
Arkutino/ 02.09.2020 D. trunculus | 3.4×104 | Citrobacter farmeri | |||
Arkutino 17.10.2020/ D. trunculus | 9.2×106 | Acinetobacter gyllenbergii | |||
Arkutino 18.11.2020/ D. trunculus | 8.9×106 | Pseudomonas alcaligenes | |||
Arkutino 18.12.2020/ D. trunculus | 1.34×107 | P. Pseudomonas alcaligenes | |||
Arkutino 18.01.2021/ D. trunculus | 3.4×104 | P. Pseudomonas alcaligenes | |||
Arkutino 18.02.2021/ D. trunculus | 4.4×104 | Acinetobacter gyllenbergii | |||
Arkutino 18.03.2021/ D. trunculus | 8.4×105 | Acinetobacter gyllenbergii | |||
Arkutino 18.04.2021/ D. trunculus | 3.2×104 | P. mendocina | |||
Arkutino 17.05.2021/ D. trunculus | 7.4×104 | 7.3×103 | Pseudomonas mendocina Enterococcus hirae - |
Fecal coliforms (FC) were represented by the species Escherichia vulneris, which was isolated only in July in a significant number of 1.6×107 (Table
The microbiota found in marine organisms, and mussels in particular, can be considered in two respects - the so-called ‘resident’ microbiota, which is stable and unaffected by the environment, and the ‘transitional’, which depends on the environmental conditions. Specifically, our studies show that fecal coliforms represented by E. vulneris, which was isolated only in July, Citrobacter farmeri, which was isolated only in September, most likely belong to the transitional species. On the opposite, the species of Pseudomonas sp., Enterococcus sp. and Acinetobacter gyllenbergii are resident for the investigated mussels. Our results demonstrate an increase in the quantity of the coliforms in the region of Arkutino in July, when the quantity of the fecal coliforms is 190 times over the norms prescribed in Ordinance No. 4/20.10.2000 for the quality of fisheries water and the breeding of shellfish (the number of fecal coliforms in the inter-shell content should be less than 300 NVB). This can be harmful to human health following the consumption of mussels.
When studying the microbiota of populations of different species of bivalves, it is very important to know their sanitary status, as well as to determine the pathobiological basis of periodic outbreaks of diseases affecting these populations. Our results demonstrated the presence of bacterial species of genera Pseudomonas, Enterococcus, Escherichia, Citrobacter, and Acinetobacer in wedge clams Donax trunculus (Linnaeus, 1758). We found that the concentrations of Escherichia vulneris exceed 190 times the maximum available values according to Ordinance No. 4/20.10.2000. Inflated concentrations of coliforms in the summer attracted very special attention, indicating a seasonal worsening of the conditions of the seawater as a consequence of anthropogenic activity. We supposed that the pollution was very serious bearing in mind that the habitat of the wedge clams is in depth within the sand. The other important conclusion is the dominance of Pseudomonas, found in the mussels, which correspond to some seasonal variations related to the physicochemical parameters of the environment, such as - temperature, pH and salinity. With the worldwide increase in bivalve consumption, we would like to point out the possibility of the emergence of new diseases due to the interaction between the pathogen, the host, and the environment.
This study was financially supported by the National Research Fund of the Bulgarian Ministry of Education and Science (Grant- H31/6 KP-06-H31/6/10.12.19) and by Shumen University, Department of Biology (Grant 08-67 / 25.01.2021).